Publications – University of Copenhagen

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DynaMo Center of Excellence > Publications

Publications

Publications authored by one or more DynaMo members

2017

Ionescu IA, López-Ortega G, Burow M, Bayo-Canha A, Junge A, Gericke O, Møller BL, Sánchez-Pérez R (2017) Transcriptome and Metabolite Changes during Hydrogen Cyanamide-Induced Floral Bud Break in Sweet Cherry. Front Plant Sci 8:

Burow M, Halkier BA (2017) How does a plant orchestrate defense in time and space? Using glucosinolates in Arabidopsis as case study. Curr Opin Plant Biol 38: 142–147.

Bassard J-E, Halkier BA (2017) How to prove the existence of metabolons? Phytochem Rev.

Larsen B, Xu D, Halkier BA, Nour-Eldin HH (2017) Advances in methods for identification and characterization of plant transporter function. J Exp Bot.

Majdi M, Malekzadeh-Mashhady A, Maroufi A, Crocoll C (2017) Tissue-specific gene-expression patterns of genes associated with thymol/carvacrol biosynthesis in thyme (Thymus vulgaris L.) and their differential changes upon treatment with abiotic elicitors. Plant Physiol Biochem 115: 152–162.

Wisecaver JH, Borowsky AT, Tzin V, Jander G, Kliebenstein DJ, Rokas A (2017) A global coexpression network approach for connecting genes to specialized metabolic pathways in plants. Plant Cell 29: 944–959.

Copley TR, Aliferis KA, Kliebenstein DJ, Jabaji SH (2017) An integrated RNAseq-(1)H NMR metabolomics approach to understand soybean primary metabolism regulation in response to Rhizoctonia foliar blight disease. BMC Plant Biol 17: 84.

Douglas SJ, Li B, Kliebenstein DJ, Nambara E, Riggs CD (2017) A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels. PLoS ONE 12: e0177045.

Markelz RJC, Covington MF, Brock MT, Devisetty UK, Kliebenstein DJ, Weinig C, Maloof JN (2017) Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population. G3 (Bethesda) 7: 2259–2270.

Kerwin RE, Feusier J, Muok A, Lin C, Larson B, Copeland D, Corwin JA, Rubin MJ, Francisco M, Li B, et al. (2017) Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field. New Phytol 215: 1249–1263.

Jæger D, Simpson BS, Ndi CP, Jäger AK, Crocoll C, Møller BL, Weinstein P, Semple SJ (2017) Biological activity and LC-MS/MS profiling of extracts from the Australian medicinal plant Acacia ligulata (Fabaceae). Nat Prod Res 1–6.

Barba-Espín G, Glied S, Crocoll C, Dzhanfezova T, Joernsgaard B, Okkels F, Lütken H, Müller R (2017) Foliar-applied ethephon enhances the content of anthocyanin of black carrot roots (Daucus carota ssp. sativus var. atrorubens Alef.). BMC Plant Biol 17: 70.

Prince DC, Rallapalli G, Xu D, Schoonbeek H, Çevik V, Asai S, Kemen E, Cruz-Mireles N, Kemen A, Belhaj K, Schornack S, Kamoun S, Holub EB, Halkier BA, Jones JDG (2017) Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana. BMC Biol 15:

Corwin JA, Kliebenstein DJ. Quantitative resistance: more than just perception of a pathogen. Plant Cell. 2017 Apr;29(4):655–665. 

Nour-Eldin HH, Madsen SR, Engelen S, Jørgensen ME, Olsen CE, Andersen JS, Seynnaeve D, Verhoye T, Fulawka R, Denolf P, Halkier BA (2017) Reduction of antinutritional glucosinolates in Brassica oilseeds by mutation of genes encoding transporters. Nat Biotechnol.

Jørgensen ME, Xu D, Crocoll C, Ramírez D, Motawia MS, Olsen CE, Nour-Eldin HH, Halkier BA (2017) Origin and evolution of transporter substrate specificity within the NPF family. elife 6:

Schulz A. Long-Distance Trafficking: Lost in Transit or Stopped at the Gate? Plant Cell. 2017 Mar;29(3):426–430. 

Strucko T, Buron LD, Jarczynska ZD, Nødvig CS, Mølgaard L, Halkier BA, Mortensen UH (2017) CASCADE, a platform for controlled gene amplification for high, tunable and selection-free gene expression in yeast. Sci Rep 7: 41431.

Payne RME, Xu D, Foureau E, Teto Carqueijeiro MIS, Oudin A, Bernonville TD de, Novak V, Burow M, Olsen C-E, Jones DM, Tatsis EC, Pendle A, Halkier BA, Geu-Flores F, Courdavault V, Nour-Eldin HH, O’Connor SE (2017) An NPF transporter exports a central monoterpene indole alkaloid intermediate from the vacuole. Nature Plants 3: 16208.

2016

Darbani B, Motawia MS, Olsen CE, Nour-Eldin HH, Møller BL, Rook F (2016) The biosynthetic gene cluster for the cyanogenic glucoside dhurrin in Sorghum bicolor contains its co-expressed vacuolar MATE transporter. Sci Rep 6: 37079.

Xu D, Hanschen FS, Witzel K, Nintemann SJ, Nour-Eldin HH, Schreiner M, Halkier BA (2016) Rhizosecretion of stele-synthesized glucosinolates and their catabolites requires GTR-mediated import in Arabidopsis. J Exp Bot.

Schwahn K, Küken A, Kliebenstein DJ, Fernie AR, Nikoloski Z (2016) Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiol 172: 1324–1333.

Jensen K  H., Berg-Sørensen K, Bruus H, Holbrook N  M., Liesche J, Schulz A, Zwieniecki M  A., Bohr T (2016) Sap flow and sugar transport in plants. Reviews of Modern Physics 88:035007

Vik D, Crocoll C, Andersen TG, Burow M, Halkier BA (2016) CB5C affects the glucosinolate profile in Arabidopsis thaliana. Plant Signal Behav 11: e1160189.

Li B, Zhang Y, Mohammadi SA, Huai D, Zhou Y, Kliebenstein DJ (2016) An integrative genetic study of rice metabolism, growth and stochastic variation reveals potential C/N partitioning loci. Sci Rep 6: 30143.

Mellor SB, Nielsen AZ, Burow M, Motawia MS, Jakubauskas D, Møller BL, Jensen PE (2016) Fusion of ferredoxin and cytochrome P450 enables direct light-driven biosynthesis. ACS Chem Biol 11: 1862–1869.

Gimpel JA, Nour-Eldin HH, Scranton MA, Li D, Mayfield SP (2016) Refactoring the six-gene photosystem ii core in the chloroplast of the green algae Chlamydomonas reinhardtii. ACS Synth Biol 5: 589–596.

Francisco M, Joseph B, Caligagan H, Li B, Corwin JA, Lin C, Kerwin RE, Burow M, Kliebenstein DJ (2016) Genome wide association mapping in Arabidopsis thaliana identifies novel genes involved in linking allyl glucosinolate to altered biomass and defense. Front Plant Sci 7: 1010.

Andersen TG, Nintemann SJ, Marek M, Halkier BA, Schulz A, Burow M (2016) Improving analytical methods for protein-protein interaction through implementation of chemically inducible dimerization. Sci Rep 6: 27766.

Nissen KS, Willats WGT, Malinovsky FG (2016) Understanding CrRLK1L function: cell walls and growth control. Trends Plant Sci 21: 516–527.

Xu D, Veres D, Belew ZM, Olsen CE, Nour-Eldin HH, Halkier BA (2016) Functional expression and characterization of plant abc transporters in Xenopus laevis oocytes for transport engineering purposes. Meth Enzymol 576: 207–224.

Francisco M, Joseph B, Caligagan H, Li B, Corwin JA, Lin C, Kerwin R, Burow M, Kliebenstein DJ (2016) The defense metabolite, allyl glucosinolate, modulates Arabidopsis thaliana biomass dependent upon the endogenous glucosinolate pathway. Front Plant Sci 7: 774.

Crocoll C, Halkier BA, Burow M (2016) Analysis and quantification of glucosinolates. In Stacey G, Birchler J, Ecker J, Martin CR, Stitt M, Zhou J-M (eds.), Current Protocols in Plant Biology pp 385–409. John Wiley & Sons, Inc., Hoboken, NJ, USA.

Tal I, Zhang Y, Jørgensen ME, Pisanty O, Barbosa ICR, Zourelidou M, Regnault T, Crocoll C, Olsen CE, Weinstain R, Schwechheimer C, Halkier BA, Nour-Eldin HH, Estelle M, Shani E (2016) The Arabidopsis NPF3 protein is a GA transporter. Nat Commun 7: 11486.

Mirza N, Crocoll C, Erik Olsen C, Ann Halkier B (2016) Engineering of methionine chain elongation part of glucoraphanin pathway in E. coli. Metab Eng 35: 31–37.

Mirza N, Schulz A, Halkier BA (2016) Characterization of methylsulfinylalkyl glucosinolate specific polyclonal antibodies. J Plant Biochem Biotechnol 25(4): 433-436

Lachowiec J, Queitsch C, Kliebenstein DJ (2016) Molecular mechanisms governing differential robustness of development and environmental responses in plants. Ann Bot 117: 795–809.

Corwin JA, Subedy A, Eshbaugh R, Kliebenstein DJ (2016) Expansive phenotypic landscape of Botrytis cinerea shows differential contribution of genetic diversity and plasticity. Mol Plant Microbe Interact 29: 287–298.

Zhang W, Kwon S-T, Chen F, Kliebenstein DJ (2016) Isolate dependency of Brassica rapa resistance QTLs to Botrytis cinerea. Front Plant Sci 7: 161.

Crocoll C, Mirza N, Reichelt M, Gershenzon J, Halkier BA (2016) Optimization of engineered production of the glucoraphanin precursor dihomomethionine in Nicotiana benthamiana. Frontiers in bioengineering and biotechnology 4: 14.

Corwin JA, Copeland D, Feusier J, Subedy A, Eshbaugh R, Palmer C, Maloof J, Kliebenstein DJ (2016) The quantitative basis of the Arabidopsis innate immune system to endemic pathogens depends on pathogen genetics. PLoS Genet 12: e1005789.

Bethke G, Thao A, Xiong G, Li B, Soltis NE, Hatsugai N, Hillmer RA, Katagiri F, Kliebenstein DJ, Pauly M, Glazebrook J (2016) Pectin biosynthesis is critical for cell wall integrity and immunity in Arabidopsis thaliana. Plant Cell 28: 537–556.

Halkier BA (2016) General introduction to glucosinolates. In S. Kopriva (Ed.), Glucosinolates. Vol 80 (1-14). Academic Press, ISSN 0065-2296, ISBN: 9780081003275, doi:10.1016/bs.abr.2016.07.001. 

Madsen SR, Nour-Eldin HH, Halkier BA (2016) Collection of apoplastic fluids from Arabidopsis thaliana leaves. Methods Mol Biol 1405: 35–42.

Jørgensen ME, Nour-Eldin HH, Halkier BA (2016) A western blot protocol for detection of proteins heterologously expressed in Xenopus laevis oocytes. Methods Mol Biol 1405: 99–107.

Jørgensen ME, Olsen CE, Halkier BA, Nour-Eldin HH (2016) Phosphorylation at serine 52 and 635 does not alter the transport properties of glucosinolate transporter AtGTR1. Plant Signal Behav 11: e1071751.

Burow M (2016) Complex environments interact with plant development to shape glucosinolate profiles. In, S. Kopriva (Ed.), Glucosinolates, Advanced in Botanical Research, vol. 80 (p. 15-30). Academic Press, ISSN 0065-2296, ISBN: 9780081003275, doi:10.1016/bs.abr.2016.06.001.

Kliebenstein DJ, Cacho NI (2016) Nonlinear Selection and a Blend of Convergent, Divergent and Parallel Evolution Shapes Natural Variation in Glucosinolates. In, In S. Kopriva (Ed.), Glucosinolates. Vol 80 (31-55). Academic Press, ISSN 0065-2296, ISBN: 9780081003275, doi: http://dx.doi.org/10.1016/bs.abr.2016.06.002.

Wlodarczyk A, Gnanasekaran T, Nielsen AZ, Zulu NN, Mellor SB, Luckner M, Thøfner JFB, Olsen CE, Mottawie MS, Burow M, Pribil M, Feussner I, Møller BL, Jensen PE (2016) Metabolic engineering of light-driven cytochrome P450 dependent pathways into Synechocystis sp. PCC 6803. Metab Eng 33: 1–11.

Nour-Eldin HH, Specht EA, Mayfield SP (2016) An improved ARG7-based selection cassette with highly efficient transformation rates and a small size suitable for complex expression constructs. Algal Research 16: 383–386.

2015

Jørgensen ME, Olsen CE, Geiger D, Mirza O, Halkier BA, Nour-Eldin HH (2015) A functional EXXEK motif is essential for proton coupling and active glucosinolate transport by NPF2.11. Plant Cell Physiol 56: 2340–2350.

Soltis NE, Kliebenstein DJ (2015) Natural variation of plant metabolism: genetic mechanisms, interpretive caveats, and evolutionary and mechanistic insights. Plant Physiol 169: 1456–1468.

Cacho NI, Kliebenstein DJ, Strauss SY (2015) Macroevolutionary patterns of glucosinolate defense and tests of defense-escalation and resource availability hypotheses. New Phytol 208: 915–927.

Madsen SR, Kunert G, Reichelt M, Gershenzon J, Halkier BA (2015) Feeding on leaves of the glucosinolate transporter mutant gtr1gtr2 reduces fitness of Myzus persicae. J Chem Ecol 41: 975–984.

Zhang Y, Huai D, Yang Q, Cheng Y, Ma M, Kliebenstein DJ, Zhou Y (2015) Overexpression of three glucosinolate biosynthesis genes in Brassica napus identifies enhanced resistance to Sclerotinia sclerotiorum and Botrytis cinerea. PLoS ONE 10: e0140491.

Atwell S, Corwin JA, Soltis NE, Subedy A, Denby KJ, Kliebenstein DJ (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Front Microbiol 6: 996.

Jensen LM, Kliebenstein DJ, Burow M (2015) Investigation of the multifunctional gene AOP3 expands the regulatory network fine-tuning glucosinolate production in Arabidopsis. Front Plant Sci 6: 762.

Jensen LM, Jepsen HSK, Halkier BA, Kliebenstein DJ, Burow M (2015) Natural variation in cross-talk between glucosinolates and onset of flowering in Arabidopsis. Front Plant Sci 6: 697.

Ziomkiewicz I, Sporring J, Pomorski TG, Schulz A (2015) Novel approach to measure the size of plasma-membrane nanodomains in single molecule localization microscopy. Cytometry A 87: 868–877.

Joseph B, Lau L, Kliebenstein DJ (2015) Quantitative variation in responses to root spatial constraint within Arabidopsis thaliana. Plant Cell 27: 2227–2243.

Xue J, Luo D, Xu D, Zeng M, Cui X, Li L, Huang H (2015) CCR1, an enzyme required for lignin biosynthesis in Arabidopsis, mediates cell proliferation exit for leaf development. Plant J 83: 375–387.

Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ (2015) Reassess the t Test: interact with All Your Data via ANOVA. Plant Cell 27: 2088–2094.

Jørgensen ME, Nour-Eldin HH, Halkier BA (2015) Transport of defense compounds from source to sink: lessons learned from glucosinolates. Trends Plant Sci 20: 508–514.

Burow M, Atwell S, Francisco M, Kerwin RE, Halkier BA, Kliebenstein DJ (2015) The glucosinolate biosynthetic Gene AOP2 mediates feed-back regulation of jasmonic acid signaling in Arabidopsis. Mol Plant 8: 1201–1212.

Habel J, Hansen M, Kynde S, Larsen N, Midtgaard SR, Jensen GV, Bomholt J, Ogbonna A, Almdal K, Schulz A, Hélix-Nielsen C (2015) Aquaporin-based biomimetic polymeric membranes: approaches and challenges. Membranes 5: 307–351.

Nafisi M, Stranne M, Fimognari L, Atwell S, Martens HJ, Pedas PR, Hansen SF, Nawrath C, Scheller HV, Kliebenstein DJ, Sakuragi Y (2015) Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses. Front Plant Sci 6: 550.

Patricelli D, Barbero F, Occhipinti A, Bertea CM, Bonelli S, Casacci LP, Zebelo SA, Crocoll C, Gershenzon J, Maffei ME, Thomas JA, Balletto E (2015) Plant defences against ants provide a pathway to social parasitism in butterflies. Proc Biol Sci 282:

Gaudinier A, Tang M, Kliebenstein DJ (2015) Transcriptional networks governing plant metabolism. Current Plant Biology.

Zhang Y, Li B, Huai D, Zhou Y, Kliebenstein DJ (2015) The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana. Front Plant Sci 6: 343.

Kerwin R, Feusier J, Corwin J, Rubin M, Lin C, Muok A, Larson B, Li B, Joseph B, Francisco M, Copeland D, Weining C, Kliebenstein DJ (2015) Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness. elife 4:

Liesche J, Windt C, Bohr T, Schulz A, Jensen KH (2015) Slower phloem transport in gymnosperm trees can be attributed to higher sieve element resistance. Tree Physiol 35: 376–386.

Liu JD, Goodspeed D, Sheng Z, Li B, Yang Y, Kliebenstein DJ, Braam J (2015) Keeping the rhythm: light/dark cycles during postharvest storage preserve the tissue integrity and nutritional content of leafy plants. BMC Plant Biol 15: 92.

Sohrabi R, Huh J-H, Badieyan S, Rakotondraibe LH, Kliebenstein DJ, Sobrado P, Tholl D (2015) In planta variation of volatile biosynthesis: an alternative biosynthetic route to the formation of the pathogen-induced volatile homoterpene DMNT via triterpene degradation in Arabidopsis roots. Plant Cell 27: 874–890.

Specht EA, Nour-Eldin HH, Hoang KTD, Mayfield SP (2015) An improved ARS2-derived nuclear reporter enhances the efficiency and ease of genetic engineering in Chlamydomonas. Biotechnol J 10: 473–479.

Pireyre M, Burow M (2015) Regulation of MYB and bHLH transcription factors: a glance at the protein level. Mol Plant 8: 378–388.

Ronellenfitsch H, Liesche J, Jensen KH, Holbrook NM, Schulz A, Katifori E (2015) Scaling of phloem structure and optimality of photoassimilate transport in conifer needles. Proc Biol Sci 282: 20141863.

Munch D, Teh O-K, Malinovsky FG, Liu Q, Vetukuri RR, El Kasmi F, Brodersen P, Hara-Nishimura I, Dangl JL, Petersen M, Mundy J, Hofius D (2015) Retromer contributes to immunity-associated cell death in Arabidopsis. Plant Cell 27: 463–479.

Yuan S, Rösner M, Schulz A, Wehling TO, Katsnelson MI (2015) Electronic structures and optical properties of partially and fully fluorinated graphene. Phys Rev Lett 114: 047403.

Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, Zhang L, Ware D, Pauly M, Kliebenstein DJ, Dehesh K, Tagkopoulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM (2015) An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature 517: 571–575.

Jung B, Ludewig F, Schulz A, Meißner G, Wöstefeld N, Flügge U-I, Pommerrenig B, Wirsching P, Sauer N, Koch W, Sommer F, Mühlhaus T, Schroda M, Cuin TA, Graus D, Marten I, Hedrich R, Neuhaus HE (2015) Identification of the transporter responsible for sucrose accumulation in sugar beet taproots. Nature Plants 1: 14001.

Joseph B, Corwin JA, Kliebenstein DJ (2015) Genetic variation in the nuclear and organellar genomes modulates stochastic variation in the metabolome, growth, and defense. PLoS Genet 11: e1004779.

Liesche J, Schulz A (2015) Quantification of plant cell coupling with live-cell microscopy. Methods Mol Biol 1217: 137–148.

Schulz A (2015) Diffusion or bulk flow: how plasmodesmata facilitate pre-phloem transport of assimilates. J Plant Res 128: 49–61.

Merchant S, Bednarek SY, Birchler JA, Coupland G, Eckardt NA, Genschik P, Greenberg J, Kieber JJ, Kliebenstein DJ, Pogson BJ (2015) The plant cell introduces breakthrough reports: a new forum for cutting-edge plant research. Plant Cell 27: 2667–2668.

2014

Li B, Gaudinier A, Tang M, Taylor-Teeples M, Nham NT, Ghaffari C, Benson DS, Steinmann M, Gray JA, Brady SM, Kliebenstein DJ (2014) Promoter-based integration in plant defense regulation. Plant Physiol 166: 1803–1820.

Mravec J, Kračun SK, Rydahl MG, Westereng B, Miart F, Clausen MH, Fangel JU, Daugaard M, Van Cutsem P, De Fine Licht HH, Höfte H, Malinovsky FG, Domozych DS, Willats WG (2014) Tracking developmentally regulated post-synthetic processing of homogalacturonan and chitin using reciprocal oligosaccharide probes. Development 141: 4841–4850.

Maharjan PM, Dilkes BP, Fujioka S, Pěnčík A, Ljung K, Burow M, Halkier BA, Choe S (2014) Arabidopsis gulliver1/SUPERROOT2-7 identifies a metabolic basis for auxin and brassinosteroid synergy. Plant J 80: 797–808.

Monaghan J, Matschi S, Shorinola O, Rovenich H, Matei A, Segonzac C, Malinovsky FG, Rathjen JP, MacLean D, Romeis T, Zipfel C (2014) The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover. Cell Host Microbe 16: 605–615.

Poulsen CP, Dilokpimol A, Mouille G, Burow M, Geshi N (2014) Arabinogalactan glycosyltransferases target to a unique subcellular compartment that may function in unconventional secretion in plants. Traffic 15: 1219–1234.

Madsen SR, Olsen CE, Nour-Eldin HH, Halkier BA (2014) Elucidating the role of transport processes in leaf glucosinolate distribution. Plant Physiol 166: 1450–1462.

Tang Y, Nielsen H, Masquida B, Gardner PP, Johansen SD (2014) Molecular characterization of a new member of the lariat capping twin-ribozyme introns. Mob DNA 5: 25.

Joseph B, Atwell S, Corwin JA, Li B, Kliebenstein DJ (2014) Meta-analysis of metabolome QTLs in Arabidopsis: trying to estimate the network size controlling genetic variation of the metabolome. Front Plant Sci 5: 461.

Li B, Kliebenstein DJ (2014) The AT-hook motif-encoding gene METABOLIC NETWORK MODULATOR 1 underlies natural variation in Arabidopsis primary metabolism. Front Plant Sci 5: 415.

Walter AM, Kurps J, de Wit H, Schöning S, Toft-Bertelsen TL, Lauks J, Ziomkiewicz I, Weiss AN, Schulz A, Fischer von Mollard G, Verhage M, Sørensen JB (2014) The SNARE protein vti1a functions in dense-core vesicle biogenesis. EMBO J 33: 1681–1697.

Bjerregard B, Ziomkiewicz I, Schulz A, Larsson L-I (2014) Syncytin-1 in differentiating human myoblasts: relationship to caveolin-3 and myogenin. Cell Tissue Res 357: 355–362.

Kliebenstein DJ (2014) Synthetic biology of metabolism: using natural variation to reverse engineer systems. Curr Opin Plant Biol 19: 20–26.

Malinovsky FG, Fangel JU, Willats WGT (2014) The role of the cell wall in plant immunity. Front Plant Sci 5: 178.

Jensen LM, Halkier BA, Burow M (2014) How to discover a metabolic pathway? An update on gene identification in aliphatic glucosinolate biosynthesis, regulation and transport. Biol Chem 395: 529–543.

Dilokpimol A, Poulsen CP, Vereb G, Kaneko S, Schulz A, Geshi N (2014) Galactosyltransferases from Arabidopsis thaliana in the biosynthesis of type II arabinogalactan: molecular interaction enhances enzyme activity. BMC Plant Biol 14: 90.

Trontin C, Kiani S, Corwin JA, Hématy K, Yansouni J, Kliebenstein DJ, Loudet O (2014) A pair of receptor-like kinases is responsible for natural variation in shoot growth response to mannitol treatment in Arabidopsis thaliana. Plant J 78: 121–133.

Kliebenstein DJ (2014) Orchestration of plant defense systems: genes to populations. Trends Plant Sci 19: 250–255.

Macho AP, Schwessinger B, Ntoukakis V, Brutus A, Segonzac C, Roy S, Kadota Y, Oh M-H, Sklenar J, Derbyshire P, Lozano-Durán R, Malinovsky FG, Monaghan J, Menke FL, Huber SC, He SY, Zipfel C (2014) A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation. Science 343: 1509–1512.

Malinovsky FG, Batoux M, Schwessinger B, Youn JH, Stransfeld L, Win J, Kim S-K, Zipfel C (2014) Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1. Plant Physiol 164: 1443–1455.

Powikrowska M, Khrouchtchova A, Martens HJ, Zygadlo-Nielsen A, Melonek J, Schulz A, Krupinska K, Rodermel S, Jensen PE (2014) SVR4 (suppressor of variegation 4) and SVR4-like: two proteins with a role in proper organization of the chloroplast genetic machinery. Physiol Plant 150: 477–492.

Klinkenberg J, Faist H, Saupe S, Lambertz S, Krischke M, Stingl N, Fekete A, Mueller MJ, Feussner I, Hedrich R, Deeken R (2014) Two fatty acid desaturases, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 and FATTY ACID DESATURASE3, are involved in drought and hypoxia stress signaling in Arabidopsis crown galls. Plant Physiol 164: 570–583.

Andersen TG, Halkier BA (2014) Upon bolting the GTR1 and GTR2 transporters mediate transport of glucosinolates to the inflorescence rather than roots. Plant Signal Behav 9: e27740.

Andersen T, Liang D, Halkier B, White R (2014) Grafting Arabidopsis. Bio-protocol 4:

Salomonsen B, Mortensen UH, Halkier BA (2014) USER-derived cloning methods and their primer design. Methods Mol Biol 1116: 59–72.

Bailly A, Wang B, Zwiewka M, Pollmann S, Schenck D, Lüthen H, Schulz A, Friml J, Geisler M (2014) Expression of TWISTED DWARF1 lacking its in-plane membrane anchor leads to increased cell elongation and hypermorphic growth. Plant J 77: 108–118.

Léran S, Varala K, Boyer J-C, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong JM, Halkier BA, Harris JM, Hedrich R, Limami AM, Rentsch D, Seo M, Tsay YF, Zhang M, Coruzzi, Lacombe B (2014) A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci 19: 5–9.

Dölger J, Rademaker H, Liesche J, Schulz A, Bohr T (2014) Diffusion and bulk flow in phloem loading: a theoretical analysis of the polymer trap mechanism for sugar transport in plants. Phys Rev E 90: 042704.

Suseela V, Triebwasser-Freese D, Linscheid N, Morgan JA, Tharayil N (2014) Litters of photosynthetically divergent grasses exhibit differential metabolic responses to warming and elevated CO2. Ecosphere 5:

Kwon ST, Kliebenstein DJ (2014) Response of turnip to Botrytis cinerea infection and their relationship with glucosinolate profiles. Korean Journal of Plant Resources 27: 371–379.

2013

Schmidt-Christensen A, Hansen L, Ilegems E, Fransén-Pettersson N, Dahl U, Gupta S, Larefalk A, Hannibal TD, Schulz A, Berggren P-O, Holmberg D (2013) Imaging dynamics of CD11c+ cells and Foxp3+ cells in progressive autoimmune insulitis in the NOD mouse model of type 1 diabetes. Diabetologia 56: 2669–2678.

Joseph B, Corwin JA, Li B, Atwell S, Kliebenstein DJ (2013) Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome. elife 2: e00776.

Møldrup ME, Salomonsen B, Geu-Flores F, Olsen CE, Halkier BA (2013) De novo genetic engineering of the camalexin biosynthetic pathway. J Biotechnol 167: 296–301.

Poulsen CP, Vereb G, Geshi N, Schulz A (2013) Inhibition of cytoplasmic streaming by Cytochalasin D is superior to paraformaldehyde fixation for measuring FRET between fluorescent protein-tagged Golgi components. Cytometry A 83: 830–838.

Andersen TG, Nour-Eldin HH, Fuller VL, Olsen CE, Burow M, Halkier BA (2013) Integration of biosynthesis and long-distance transport establish organ-specific glucosinolate profiles in vegetative Arabidopsis. Plant Cell 25: 3133–3145.

Walley JW, Kliebenstein DJ, Bostock RM, Dehesh K (2013) Fatty acids and early detection of pathogens. Curr Opin Plant Biol 16: 520–526.

Gjetting SK, Schulz A, Fuglsang AT (2013) Perspectives for using genetically encoded fluorescent biosensors in plants. Front Plant Sci 4: 234.

Goodspeed D, Liu JD, Chehab EW, Sheng Z, Francisco M, Kliebenstein DJ, Braam J (2013) Postharvest circadian entrainment enhances crop pest resistance and phytochemical cycling. Curr Biol 23: 1235–1241.

Liesche J, Schulz A (2013) Modeling the parameters for plasmodesmal sugar filtering in active symplasmic phloem loaders. Front Plant Sci 4: 207.

Joseph B, Corwin JA, Züst T, Li B, Iravani M, Schaepman-Strub G, Turnbull LA, Kliebenstein DJ (2013) Hierarchical nuclear and cytoplasmic genetic architectures for plant growth and defense within Arabidopsis. Plant Cell 25: 1929–1945.

Ron M, Dorrity MW, de Lucas M, Toal T, Hernandez RI, Little SA, Maloof JN, Kliebenstein DJ, Brady SM (2013) Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato. Plant Physiol 162: 755–768.

Farid A, Malinovsky FG, Veit C, Schoberer J, Zipfel C, Strasser R (2013) Specialized roles of the conserved subunit OST3/6 of the oligosaccharyltransferase complex in innate immunity and tolerance to abiotic stresses. Plant Physiol 162: 24–38.

Nour-Eldin HH, Halkier BA (2013) The emerging field of transport engineering of plant specialized metabolites. Curr Opin Biotechnol 24: 263–270.

Kliebenstein DJ (2013) New synthesis-regulatory evolution, the veiled world of chemical diversification. J Chem Ecol 39: 349.

Xiong X, Xu D, Yang Z, Huang H, Cui X (2013) A single amino-acid substitution at lysine 40 of an Arabidopsis thaliana α-tubulin causes extensive cell proliferation and expansion defects. J Integr Plant Biol 55: 209–220.

Silvestro D, Andersen TG, Schaller H, Jensen PE (2013) Plant sterol metabolism. Δ(7)-Sterol-C5-desaturase (STE1/DWARF7), Δ(5,7)-sterol-Δ(7)-reductase (DWARF5) and Δ(24)-sterol-Δ(24)-reductase (DIMINUTO/DWARF1) show multiple subcellular localizations in Arabidopsis thaliana (Heynh) L. PLoS ONE 8: e56429.

Moldrup ME, Geu-Flores F, Halkier BA (2013) Assigning gene function in biosynthetic pathways: camalexin and beyond. The Plant cell 25: 360–367.

Kliebenstein DJ (2013) Making new molecules-evolution of structures for novel metabolites in plants. Curr Opin Plant Biol 16: 112–117.

Wang B, Bailly A, Zwiewka M, Henrichs S, Azzarello E, Mancuso S, Maeshima M, Friml J, Schulz A, Geisler M (2013) Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1 on the root plasma membrane. Plant Cell 25: 202–214.

Liesche J, Schulz A (2013) Symplasmic transport in phloem loading and unloading. In Sokołowska K, Sowiński P (eds.), Symplasmic Transport in Vascular Plants pp 133–163. Springer Science & Business Media, New York. 

2012

Züst T, Heichinger C, Grossniklaus U, Harrington R, Kliebenstein DJ, Turnbull LA (2012) Natural enemies drive geographic variation in plant defenses. Science 338: 116–119.

Windram O, Madhou P, McHattie S, Hill C, Hickman R, Cooke E, Jenkins DJ, Penfold CA, Baxter L, Breeze E, Kiddle SJ, Rhodes J, Atell S, Kliebenstein DJ, Kim YS, Stegle O, Borgwardt K, Zhang C, Tabrett A, Legaie R, Moore J, Finkenstadt B, Wild DL, Mead A, Rand D, Beynon J, Ott S, Buchanan-Wollaston V, Denby KJ (2012) Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. Plant Cell 24: 3530–3557.

Kliebenstein DJ (2012) Exploring the shallow end; estimating information content in transcriptomics studies. Front Plant Sci 3: 213.

Nongbri PL, Johnson JM, Sherameti I, Glawischnig E, Halkier BA, Oelmüller R (2012) Indole-3-acetaldoxime-derived compounds restrict root colonization in the beneficial interaction between Arabidopsis roots and the endophyte Piriformospora indica. Mol Plant Microbe Interact 25: 1186–1197.

Gleadow RM, Møldrup ME, O’Donnell NH, Stuart PN (2012) Drying and processing protocols affect the quantification of cyanogenic glucosides in forage sorghum. J Sci Food Agric 92: 2234–2238.

Nour-Eldin HH, Andersen TG, Burow M, Madsen SR, Jørgensen ME, Olsen CE, Dreyer I, Hedrich R, Geiger D, Halkier BA (2012) NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds. Nature 488: 531–534.

Kuchernig JC, Burow M, Wittstock U (2012) Evolution of specifier proteins in glucosinolate-containing plants. BMC Evol Biol 12: 127.

Whiteman NK, Gloss AD, Sackton TB, Groen SC, Humphrey PT, Lapoint RT, Sønderby IE, Halkier BA, Kocks C, Ausubel FM, Pierce NE (2012) Genes involved in the evolution of herbivory by a leaf-mining, Drosophilid fly. Genome Biol Evol 4: 900–916.

Liesche J, Schulz A (2012) Quantification of plant cell coupling with three-dimensional photoactivation microscopy. J Microsc 247: 2–9.

Henrichs S, Wang B, Fukao Y, Zhu J, Charrier L, Bailly A, Oehring SC, Linnert M, Weiwad M, Endler A, Nanni P, Pollmann S, Mancuso S, Schulz A, Geisler M (2012) Regulation of ABCB1/PGP1-catalysed auxin transport by linker phosphorylation. EMBO J 31: 2965–2980.

Xiao Y, Savchenko T, Baidoo EEK, Chehab WE, Hayden DM, Tolstikov V, Corwin JA, Kliebenstein DJ, Keasling JD, Dehesh K (2012) Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes. Cell 149: 1525–1535.

Kliebenstein DJ (2012) Plant defense compounds: systems approaches to metabolic analysis. Annu Rev Phytopathol 50: 155–173.

Jensen KH, Liesche J, Bohr T, Schulz A (2012) Universality of phloem transport in seed plants. Plant Cell Environ 35: 1065–1076.

Møldrup ME, Geu-Flores F, de Vos M, Olsen CE, Sun J, Jander G, Halkier BA (2012) Engineering of benzylglucosinolate in tobacco provides proof-of-concept for dead-end trap crops genetically modified to attract Plutella xylostella (diamondback moth). Plant Biotechnol J 10: 435–442.

Liesche J, Schulz A (2012) In vivo quantification of cell coupling in plants with different phloem-loading strategies. Plant Physiol 159: 355–365.

Gjetting KSK, Ytting CK, Schulz A, Fuglsang AT (2012) Live imaging of intra- and extracellular pH in plants using pHusion, a novel genetically encoded biosensor. J Exp Bot 63: 3207–3218.

Blair RH, Kliebenstein DJ, Churchill GA (2012) What can causal networks tell us about metabolic pathways? PLoS Comput Biol 8: e1002458.

Mikkelsen MD, Buron LD, Salomonsen B, Olsen CE, Hansen BG, Mortensen UH, Halkier BA (2012) Microbial production of indolylglucosinolate through engineering of a multi-gene pathway in a versatile yeast expression platform. Metab Eng 14: 104–111.

Kliebenstein DJ (2012) Model misinterpretation within biology: phenotypes, statistics, networks, and inference. Front Plant Sci 3: 13.

Møldrup ME, Salomonsen B, Halkier BA (2012) Engineering of glucosinolate biosynthesis: candidate gene identification and validation. Meth Enzymol 515: 291–313.

Gershenzon J, Fontana A, Burow M, Wittstock U, Degenhardt J (2012) Mixtures of plant secondary metabolites: metabolic origins and ecological benefits. In Lason GR, Dicke M, Hartley SE (eds.), The ecology of plant secondary metabolites: From genes to global processes pp 56 – 77. Cambridge University Press, New York.

Kliebenstein DJ (2012) Quantitative genomics of natural variation in plant metabolism: when will the complexity end? Pharmaceutical Biology 50: 1344–1344.